EPI-104_S28_L005_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 46064 lines in total Total number of methylation call strings processed: 92128 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1032571 Total methylated C's in CpG context: 38014 Total methylated C's in CHG context: 5157 Total methylated C's in CHH context: 27407 Total C to T conversions in CpG context: 98076 Total C to T conversions in CHG context: 204141 Total C to T conversions in CHH context: 659776 C methylated in CpG context: 27.9% C methylated in CHG context: 2.5% C methylated in CHH context: 4.0%