EPI-103_S27_L005_R1_001_val_1_bismark_bt2_pe.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0_dev Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 45175 lines in total Total number of methylation call strings processed: 90350 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1077416 Total methylated C's in CpG context: 35436 Total methylated C's in CHG context: 5121 Total methylated C's in CHH context: 24754 Total C to T conversions in CpG context: 112604 Total C to T conversions in CHG context: 214913 Total C to T conversions in CHH context: 684588 C methylated in CpG context: 23.9% C methylated in CHG context: 2.3% C methylated in CHH context: 3.5%