Alignment Stats
| Sequences analysed in total |
1635584275 |
| Single-end alignments with a unique best hit |
507562199 |
| Sequences without alignments under any condition |
477689355 |
| Sequences that did not map uniquely |
650332721 |
| Genomic sequence context not extractable (edges of chromosomes) |
496024 |
|
|
Cytosine Methylation
| Total C's analysed |
3127742922 |
| Methylated C's in CpG context |
450929646 |
| Methylated C's in CHG context |
14053551 |
| Methylated C's in CHH context |
169276746 |
| Methylated C's in Unknown context |
84062 |
| Unmethylated C's in CpG context |
83521836 |
| Unmethylated C's in CHG context |
623336476 |
| Unmethylated C's in CHH context |
1786624667 |
| Unmethylated C's in Unknown context |
569646 |
| Percentage methylation (CpG context) |
84.4% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
8.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
115629955 |
original top strand |
| CTOT |
138900291 |
complementary to original top strand |
| CTOB |
137740675 |
complementary to original bottom strand |
| OB |
114795254 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
507066175 |
| Unique alignments |
100277394 |
| Duplicates removed |
406788781 |
| Duplicated alignments were found at 67040665 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
589517746 |
| Methylated C's in CpG context |
54161439 |
| Methylated C's in CHG context |
3410986 |
| Methylated C's in CHH context |
51877126 |
| Unmethylated C's in CpG context |
18632781 |
| Unmethylated C's in CHG context |
98241295 |
| Unmethylated C's in CHH context |
363194119 |
| Percentage methylation (CpG context) |
74.4% |
| Percentage methylation (CHG context) |
3.4% |
| Percentage methylation (CHH context) |
12.5% |
|
|
M-Bias Plot
