zr1394_all_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 100277394 lines in total Total number of methylation call strings processed: 100277394 Final Cytosine Methylation Report ================================= Total number of C's analysed: 589517746 Total methylated C's in CpG context: 54161439 Total methylated C's in CHG context: 3410986 Total methylated C's in CHH context: 51877126 Total C to T conversions in CpG context: 18632781 Total C to T conversions in CHG context: 98241295 Total C to T conversions in CHH context: 363194119 C methylated in CpG context: 74.4% C methylated in CHG context: 3.4% C methylated in CHH context: 12.5%