Alignment Stats
| Sequences analysed in total |
605809374 |
| Single-end alignments with a unique best hit |
146216889 |
| Sequences without alignments under any condition |
246381185 |
| Sequences that did not map uniquely |
213211300 |
| Genomic sequence context not extractable (edges of chromosomes) |
61826 |
|
|
Cytosine Methylation
| Total C's analysed |
912885367 |
| Methylated C's in CpG context |
132313268 |
| Methylated C's in CHG context |
4673170 |
| Methylated C's in CHH context |
63365512 |
| Methylated C's in Unknown context |
20620 |
| Unmethylated C's in CpG context |
25469052 |
| Unmethylated C's in CHG context |
171379800 |
| Unmethylated C's in CHH context |
515684565 |
| Unmethylated C's in Unknown context |
113058 |
| Percentage methylation (CpG context) |
83.9% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
10.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
33641201 |
original top strand |
| CTOT |
39779165 |
complementary to original top strand |
| CTOB |
39289786 |
complementary to original bottom strand |
| OB |
33444911 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
146155063 |
| Unique alignments |
46373119 |
| Duplicates removed |
99781944 |
| Duplicated alignments were found at 16205715 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
278742554 |
| Methylated C's in CpG context |
26906729 |
| Methylated C's in CHG context |
1781155 |
| Methylated C's in CHH context |
28939234 |
| Unmethylated C's in CpG context |
8635735 |
| Unmethylated C's in CHG context |
43946205 |
| Unmethylated C's in CHH context |
168533496 |
| Percentage methylation (CpG context) |
75.7% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
14.7% |
|
|
M-Bias Plot
