Alignment Stats
| Sequences analysed in total |
77350922 |
| Single-end alignments with a unique best hit |
19984598 |
| Sequences without alignments under any condition |
30671788 |
| Sequences that did not map uniquely |
26694536 |
| Genomic sequence context not extractable (edges of chromosomes) |
7540 |
|
|
Cytosine Methylation
| Total C's analysed |
119671174 |
| Methylated C's in CpG context |
12630031 |
| Methylated C's in CHG context |
518512 |
| Methylated C's in CHH context |
8542027 |
| Methylated C's in Unknown context |
1880 |
| Unmethylated C's in CpG context |
3349469 |
| Unmethylated C's in CHG context |
21459404 |
| Unmethylated C's in CHH context |
73171731 |
| Unmethylated C's in Unknown context |
13241 |
| Percentage methylation (CpG context) |
79.0% |
| Percentage methylation (CHG context) |
2.4% |
| Percentage methylation (CHH context) |
10.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
4526893 |
original top strand |
| CTOT |
5500698 |
complementary to original top strand |
| CTOB |
5442627 |
complementary to original bottom strand |
| OB |
4506840 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
19977058 |
| Unique alignments |
12812127 |
| Duplicates removed |
7164931 |
| Duplicated alignments were found at 2565720 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
75709462 |
| Methylated C's in CpG context |
6976233 |
| Methylated C's in CHG context |
355964 |
| Methylated C's in CHH context |
6308433 |
| Unmethylated C's in CpG context |
2143064 |
| Unmethylated C's in CHG context |
12824703 |
| Unmethylated C's in CHH context |
47101065 |
| Percentage methylation (CpG context) |
76.5% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
11.8% |
|
|
M-Bias Plot
