Alignment Stats
| Sequences analysed in total |
38697189 |
| Single-end alignments with a unique best hit |
9523100 |
| Sequences without alignments under any condition |
15822075 |
| Sequences that did not map uniquely |
13352014 |
| Genomic sequence context not extractable (edges of chromosomes) |
3569 |
|
|
Cytosine Methylation
| Total C's analysed |
58792018 |
| Methylated C's in CpG context |
7971301 |
| Methylated C's in CHG context |
300645 |
| Methylated C's in CHH context |
4199146 |
| Methylated C's in Unknown context |
1156 |
| Unmethylated C's in CpG context |
1357932 |
| Unmethylated C's in CHG context |
10977916 |
| Unmethylated C's in CHH context |
33985078 |
| Unmethylated C's in Unknown context |
6970 |
| Percentage methylation (CpG context) |
85.4% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
11.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2127682 |
original top strand |
| CTOT |
2651382 |
complementary to original top strand |
| CTOB |
2622873 |
complementary to original bottom strand |
| OB |
2117594 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
9519531 |
| Unique alignments |
6568453 |
| Duplicates removed |
2951078 |
| Duplicated alignments were found at 1150254 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
39971460 |
| Methylated C's in CpG context |
4836003 |
| Methylated C's in CHG context |
216974 |
| Methylated C's in CHH context |
3271126 |
| Unmethylated C's in CpG context |
915478 |
| Unmethylated C's in CHG context |
7094192 |
| Unmethylated C's in CHH context |
23637687 |
| Percentage methylation (CpG context) |
84.1% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
12.2% |
|
|
M-Bias Plot
