Alignment Stats
| Sequences analysed in total |
49730113 |
| Single-end alignments with a unique best hit |
12175088 |
| Sequences without alignments under any condition |
20602272 |
| Sequences that did not map uniquely |
16952753 |
| Genomic sequence context not extractable (edges of chromosomes) |
4774 |
|
|
Cytosine Methylation
| Total C's analysed |
74916181 |
| Methylated C's in CpG context |
9646533 |
| Methylated C's in CHG context |
391823 |
| Methylated C's in CHH context |
5377197 |
| Methylated C's in Unknown context |
1404 |
| Unmethylated C's in CpG context |
2085465 |
| Unmethylated C's in CHG context |
13912725 |
| Unmethylated C's in CHH context |
43502438 |
| Unmethylated C's in Unknown context |
8321 |
| Percentage methylation (CpG context) |
82.2% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
11.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2796387 |
original top strand |
| CTOT |
3315619 |
complementary to original top strand |
| CTOB |
3276555 |
complementary to original bottom strand |
| OB |
2781753 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
12170314 |
| Unique alignments |
8282510 |
| Duplicates removed |
3887804 |
| Duplicated alignments were found at 1495485 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
50230657 |
| Methylated C's in CpG context |
5722013 |
| Methylated C's in CHG context |
278091 |
| Methylated C's in CHH context |
4157227 |
| Unmethylated C's in CpG context |
1407766 |
| Unmethylated C's in CHG context |
8854701 |
| Unmethylated C's in CHH context |
29810859 |
| Percentage methylation (CpG context) |
80.3% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
12.2% |
|
|
M-Bias Plot
