Alignment Stats
| Sequences analysed in total |
46455148 |
| Single-end alignments with a unique best hit |
12263620 |
| Sequences without alignments under any condition |
19313057 |
| Sequences that did not map uniquely |
14878471 |
| Genomic sequence context not extractable (edges of chromosomes) |
4333 |
|
|
Cytosine Methylation
| Total C's analysed |
72321697 |
| Methylated C's in CpG context |
6785652 |
| Methylated C's in CHG context |
357854 |
| Methylated C's in CHH context |
5655325 |
| Methylated C's in Unknown context |
974 |
| Unmethylated C's in CpG context |
1919729 |
| Unmethylated C's in CHG context |
13022398 |
| Unmethylated C's in CHH context |
44580739 |
| Unmethylated C's in Unknown context |
7575 |
| Percentage methylation (CpG context) |
77.9% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
11.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2761017 |
original top strand |
| CTOT |
3390420 |
complementary to original top strand |
| CTOB |
3357895 |
complementary to original bottom strand |
| OB |
2749955 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
12259287 |
| Unique alignments |
9168099 |
| Duplicates removed |
3091188 |
| Duplicated alignments were found at 1424553 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
53570122 |
| Methylated C's in CpG context |
4597895 |
| Methylated C's in CHG context |
267098 |
| Methylated C's in CHH context |
4504381 |
| Unmethylated C's in CpG context |
1438902 |
| Unmethylated C's in CHG context |
9316512 |
| Unmethylated C's in CHH context |
33445334 |
| Percentage methylation (CpG context) |
76.2% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
11.9% |
|
|
M-Bias Plot
