Alignment Stats
| Sequences analysed in total |
47401736 |
| Single-end alignments with a unique best hit |
12477785 |
| Sequences without alignments under any condition |
19516870 |
| Sequences that did not map uniquely |
15407081 |
| Genomic sequence context not extractable (edges of chromosomes) |
4488 |
|
|
Cytosine Methylation
| Total C's analysed |
74333364 |
| Methylated C's in CpG context |
7469156 |
| Methylated C's in CHG context |
359359 |
| Methylated C's in CHH context |
5921080 |
| Methylated C's in Unknown context |
1192 |
| Unmethylated C's in CpG context |
2522221 |
| Unmethylated C's in CHG context |
13779482 |
| Unmethylated C's in CHH context |
44282066 |
| Unmethylated C's in Unknown context |
7439 |
| Percentage methylation (CpG context) |
74.8% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
11.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2851638 |
original top strand |
| CTOT |
3409626 |
complementary to original top strand |
| CTOB |
3370322 |
complementary to original bottom strand |
| OB |
2841711 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
12473297 |
| Unique alignments |
9178110 |
| Duplicates removed |
3295187 |
| Duplicated alignments were found at 1470802 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
54183369 |
| Methylated C's in CpG context |
4893430 |
| Methylated C's in CHG context |
270511 |
| Methylated C's in CHH context |
4694436 |
| Unmethylated C's in CpG context |
1878697 |
| Unmethylated C's in CHG context |
9626073 |
| Unmethylated C's in CHH context |
32820222 |
| Percentage methylation (CpG context) |
72.3% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
12.5% |
|
|
M-Bias Plot
