Alignment Stats
| Sequences analysed in total |
44905078 |
| Single-end alignments with a unique best hit |
10995781 |
| Sequences without alignments under any condition |
18625519 |
| Sequences that did not map uniquely |
15283778 |
| Genomic sequence context not extractable (edges of chromosomes) |
4353 |
|
|
Cytosine Methylation
| Total C's analysed |
67752173 |
| Methylated C's in CpG context |
8917744 |
| Methylated C's in CHG context |
360092 |
| Methylated C's in CHH context |
4933503 |
| Methylated C's in Unknown context |
1221 |
| Unmethylated C's in CpG context |
1626331 |
| Unmethylated C's in CHG context |
12609014 |
| Unmethylated C's in CHH context |
39305489 |
| Unmethylated C's in Unknown context |
7467 |
| Percentage methylation (CpG context) |
84.6% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
11.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2474330 |
original top strand |
| CTOT |
3046844 |
complementary to original top strand |
| CTOB |
3015697 |
complementary to original bottom strand |
| OB |
2454557 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
10991428 |
| Unique alignments |
7374338 |
| Duplicates removed |
3617090 |
| Duplicated alignments were found at 1354206 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
44754848 |
| Methylated C's in CpG context |
5210066 |
| Methylated C's in CHG context |
253236 |
| Methylated C's in CHH context |
3757790 |
| Unmethylated C's in CpG context |
1067149 |
| Unmethylated C's in CHG context |
7898014 |
| Unmethylated C's in CHH context |
26568593 |
| Percentage methylation (CpG context) |
83.0% |
| Percentage methylation (CHG context) |
3.1% |
| Percentage methylation (CHH context) |
12.4% |
|
|
M-Bias Plot
