Alignment Stats
| Sequences analysed in total |
48376729 |
| Single-end alignments with a unique best hit |
11710900 |
| Sequences without alignments under any condition |
20186374 |
| Sequences that did not map uniquely |
16479455 |
| Genomic sequence context not extractable (edges of chromosomes) |
4911 |
|
|
Cytosine Methylation
| Total C's analysed |
71201719 |
| Methylated C's in CpG context |
8686245 |
| Methylated C's in CHG context |
362509 |
| Methylated C's in CHH context |
5275881 |
| Methylated C's in Unknown context |
1358 |
| Unmethylated C's in CpG context |
1984216 |
| Unmethylated C's in CHG context |
12789657 |
| Unmethylated C's in CHH context |
42103211 |
| Unmethylated C's in Unknown context |
7803 |
| Percentage methylation (CpG context) |
81.4% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
11.1% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2643508 |
original top strand |
| CTOT |
3235499 |
complementary to original top strand |
| CTOB |
3198110 |
complementary to original bottom strand |
| OB |
2628872 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
11705989 |
| Unique alignments |
8087518 |
| Duplicates removed |
3618471 |
| Duplicated alignments were found at 1381700 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
48505780 |
| Methylated C's in CpG context |
5175437 |
| Methylated C's in CHG context |
259268 |
| Methylated C's in CHH context |
4088283 |
| Unmethylated C's in CpG context |
1368035 |
| Unmethylated C's in CHG context |
8268346 |
| Unmethylated C's in CHH context |
29346411 |
| Percentage methylation (CpG context) |
79.1% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
12.2% |
|
|
M-Bias Plot
