Alignment Stats
| Sequences analysed in total |
46105140 |
| Single-end alignments with a unique best hit |
11724450 |
| Sequences without alignments under any condition |
19221903 |
| Sequences that did not map uniquely |
15158787 |
| Genomic sequence context not extractable (edges of chromosomes) |
4558 |
|
|
Cytosine Methylation
| Total C's analysed |
71191354 |
| Methylated C's in CpG context |
8594713 |
| Methylated C's in CHG context |
366860 |
| Methylated C's in CHH context |
5407980 |
| Methylated C's in Unknown context |
1227 |
| Unmethylated C's in CpG context |
1924039 |
| Unmethylated C's in CHG context |
13342035 |
| Unmethylated C's in CHH context |
41555727 |
| Unmethylated C's in Unknown context |
7283 |
| Percentage methylation (CpG context) |
81.7% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
11.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2639464 |
original top strand |
| CTOT |
3242721 |
complementary to original top strand |
| CTOB |
3212565 |
complementary to original bottom strand |
| OB |
2625142 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
11719892 |
| Unique alignments |
7995609 |
| Duplicates removed |
3724283 |
| Duplicated alignments were found at 1559750 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
48052045 |
| Methylated C's in CpG context |
5203176 |
| Methylated C's in CHG context |
260623 |
| Methylated C's in CHH context |
4107377 |
| Unmethylated C's in CpG context |
1320948 |
| Unmethylated C's in CHG context |
8570542 |
| Unmethylated C's in CHH context |
28589379 |
| Percentage methylation (CpG context) |
79.8% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
12.6% |
|
|
M-Bias Plot
