Alignment Stats
| Sequences analysed in total |
55048106 |
| Single-end alignments with a unique best hit |
14252437 |
| Sequences without alignments under any condition |
21991657 |
| Sequences that did not map uniquely |
18804012 |
| Genomic sequence context not extractable (edges of chromosomes) |
5287 |
|
|
Cytosine Methylation
| Total C's analysed |
86615880 |
| Methylated C's in CpG context |
10502357 |
| Methylated C's in CHG context |
403533 |
| Methylated C's in CHH context |
6221917 |
| Methylated C's in Unknown context |
1408 |
| Unmethylated C's in CpG context |
2318634 |
| Unmethylated C's in CHG context |
16473257 |
| Unmethylated C's in CHH context |
50696182 |
| Unmethylated C's in Unknown context |
10049 |
| Percentage methylation (CpG context) |
81.9% |
| Percentage methylation (CHG context) |
2.4% |
| Percentage methylation (CHH context) |
10.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3154293 |
original top strand |
| CTOT |
3998948 |
complementary to original top strand |
| CTOB |
3956463 |
complementary to original bottom strand |
| OB |
3137446 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
14247150 |
| Unique alignments |
9291908 |
| Duplicates removed |
4955242 |
| Duplicated alignments were found at 1909975 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
55767083 |
| Methylated C's in CpG context |
5940617 |
| Methylated C's in CHG context |
277785 |
| Methylated C's in CHH context |
4617003 |
| Unmethylated C's in CpG context |
1497305 |
| Unmethylated C's in CHG context |
10045285 |
| Unmethylated C's in CHH context |
33389088 |
| Percentage methylation (CpG context) |
79.9% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
12.1% |
|
|
M-Bias Plot
