Alignment Stats
| Sequences analysed in total |
74531056 |
| Single-end alignments with a unique best hit |
16887122 |
| Sequences without alignments under any condition |
30685115 |
| Sequences that did not map uniquely |
26958819 |
| Genomic sequence context not extractable (edges of chromosomes) |
7822 |
|
|
Cytosine Methylation
| Total C's analysed |
106385975 |
| Methylated C's in CpG context |
16804738 |
| Methylated C's in CHG context |
565878 |
| Methylated C's in CHH context |
7190353 |
| Methylated C's in Unknown context |
2962 |
| Unmethylated C's in CpG context |
3074886 |
| Unmethylated C's in CHG context |
19338243 |
| Unmethylated C's in CHH context |
59411877 |
| Unmethylated C's in Unknown context |
13297 |
| Percentage methylation (CpG context) |
84.5% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
10.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3891231 |
original top strand |
| CTOT |
4594843 |
complementary to original top strand |
| CTOB |
4530426 |
complementary to original bottom strand |
| OB |
3862800 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
16879300 |
| Unique alignments |
9152179 |
| Duplicates removed |
7727121 |
| Duplicated alignments were found at 2138322 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
56409754 |
| Methylated C's in CpG context |
7253055 |
| Methylated C's in CHG context |
334133 |
| Methylated C's in CHH context |
4911041 |
| Unmethylated C's in CpG context |
1659423 |
| Unmethylated C's in CHG context |
9414630 |
| Unmethylated C's in CHH context |
32837472 |
| Percentage methylation (CpG context) |
81.4% |
| Percentage methylation (CHG context) |
3.4% |
| Percentage methylation (CHH context) |
13.0% |
|
|
M-Bias Plot
