Alignment Stats
| Sequences analysed in total |
67984205 |
| Single-end alignments with a unique best hit |
15694384 |
| Sequences without alignments under any condition |
28009193 |
| Sequences that did not map uniquely |
24280628 |
| Genomic sequence context not extractable (edges of chromosomes) |
6700 |
|
|
Cytosine Methylation
| Total C's analysed |
99648422 |
| Methylated C's in CpG context |
16146845 |
| Methylated C's in CHG context |
537672 |
| Methylated C's in CHH context |
6779395 |
| Methylated C's in Unknown context |
2641 |
| Unmethylated C's in CpG context |
2533863 |
| Unmethylated C's in CHG context |
18697431 |
| Unmethylated C's in CHH context |
54953216 |
| Unmethylated C's in Unknown context |
12429 |
| Percentage methylation (CpG context) |
86.4% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
11.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3556064 |
original top strand |
| CTOT |
4328479 |
complementary to original top strand |
| CTOB |
4260613 |
complementary to original bottom strand |
| OB |
3542528 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
15687684 |
| Unique alignments |
8276307 |
| Duplicates removed |
7411377 |
| Duplicated alignments were found at 2004615 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
51329402 |
| Methylated C's in CpG context |
6815335 |
| Methylated C's in CHG context |
313906 |
| Methylated C's in CHH context |
4527620 |
| Unmethylated C's in CpG context |
1340799 |
| Unmethylated C's in CHG context |
8807650 |
| Unmethylated C's in CHH context |
29524092 |
| Percentage methylation (CpG context) |
83.6% |
| Percentage methylation (CHG context) |
3.4% |
| Percentage methylation (CHH context) |
13.3% |
|
|
M-Bias Plot
