Alignment Stats
| Sequences analysed in total |
605809374 |
| Single-end alignments with a unique best hit |
27806680 |
| Sequences without alignments under any condition |
550394238 |
| Sequences that did not map uniquely |
27608456 |
| Genomic sequence context not extractable (edges of chromosomes) |
671 |
|
|
Cytosine Methylation
| Total C's analysed |
172354157 |
| Methylated C's in CpG context |
27953676 |
| Methylated C's in CHG context |
967507 |
| Methylated C's in CHH context |
8116739 |
| Methylated C's in Unknown context |
972 |
| Unmethylated C's in CpG context |
7703035 |
| Unmethylated C's in CHG context |
30588122 |
| Unmethylated C's in CHH context |
97025078 |
| Unmethylated C's in Unknown context |
3699 |
| Percentage methylation (CpG context) |
78.4% |
| Percentage methylation (CHG context) |
3.1% |
| Percentage methylation (CHH context) |
7.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5864343 |
original top strand |
| CTOT |
7523167 |
complementary to original top strand |
| CTOB |
8088354 |
complementary to original bottom strand |
| OB |
6330145 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
27806009 |
| Unique alignments |
1129977 |
| Duplicates removed |
26676032 |
| Duplicated alignments were found at 637756 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
6688214 |
| Methylated C's in CpG context |
537926 |
| Methylated C's in CHG context |
50095 |
| Methylated C's in CHH context |
784788 |
| Unmethylated C's in CpG context |
276545 |
| Unmethylated C's in CHG context |
833957 |
| Unmethylated C's in CHH context |
4204903 |
| Percentage methylation (CpG context) |
66.0% |
| Percentage methylation (CHG context) |
5.7% |
| Percentage methylation (CHH context) |
15.7% |
|
|
M-Bias Plot
