Alignment Stats
| Sequences analysed in total |
77350922 |
| Single-end alignments with a unique best hit |
3614877 |
| Sequences without alignments under any condition |
69851458 |
| Sequences that did not map uniquely |
3884587 |
| Genomic sequence context not extractable (edges of chromosomes) |
89 |
|
|
Cytosine Methylation
| Total C's analysed |
22085171 |
| Methylated C's in CpG context |
2591728 |
| Methylated C's in CHG context |
102822 |
| Methylated C's in CHH context |
1045017 |
| Methylated C's in Unknown context |
74 |
| Unmethylated C's in CpG context |
1010302 |
| Unmethylated C's in CHG context |
3818600 |
| Unmethylated C's in CHH context |
13516702 |
| Unmethylated C's in Unknown context |
741 |
| Percentage methylation (CpG context) |
72.0% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
7.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
743807 |
original top strand |
| CTOT |
999563 |
complementary to original top strand |
| CTOB |
1061481 |
complementary to original bottom strand |
| OB |
809937 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
3614788 |
| Unique alignments |
481549 |
| Duplicates removed |
3133239 |
| Duplicated alignments were found at 235196 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2945477 |
| Methylated C's in CpG context |
251709 |
| Methylated C's in CHG context |
16074 |
| Methylated C's in CHH context |
272980 |
| Unmethylated C's in CpG context |
128793 |
| Unmethylated C's in CHG context |
389241 |
| Unmethylated C's in CHH context |
1886680 |
| Percentage methylation (CpG context) |
66.2% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
12.6% |
|
|
M-Bias Plot
