Alignment Stats
| Sequences analysed in total |
38697189 |
| Single-end alignments with a unique best hit |
1779165 |
| Sequences without alignments under any condition |
35045244 |
| Sequences that did not map uniquely |
1872780 |
| Genomic sequence context not extractable (edges of chromosomes) |
58 |
|
|
Cytosine Methylation
| Total C's analysed |
10983738 |
| Methylated C's in CpG context |
1642871 |
| Methylated C's in CHG context |
61069 |
| Methylated C's in CHH context |
546466 |
| Methylated C's in Unknown context |
65 |
| Unmethylated C's in CpG context |
439184 |
| Unmethylated C's in CHG context |
1942783 |
| Unmethylated C's in CHH context |
6351365 |
| Unmethylated C's in Unknown context |
292 |
| Percentage methylation (CpG context) |
78.9% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
7.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
357923 |
original top strand |
| CTOT |
504571 |
complementary to original top strand |
| CTOB |
529862 |
complementary to original bottom strand |
| OB |
386751 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
1779107 |
| Unique alignments |
314494 |
| Duplicates removed |
1464613 |
| Duplicated alignments were found at 142349 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1963151 |
| Methylated C's in CpG context |
213026 |
| Methylated C's in CHG context |
11872 |
| Methylated C's in CHH context |
183281 |
| Unmethylated C's in CpG context |
74232 |
| Unmethylated C's in CHG context |
269542 |
| Unmethylated C's in CHH context |
1211198 |
| Percentage methylation (CpG context) |
74.2% |
| Percentage methylation (CHG context) |
4.2% |
| Percentage methylation (CHH context) |
13.1% |
|
|
M-Bias Plot
