zr1394_7_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 368773 lines in total Total number of methylation call strings processed: 368773 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2285525 Total methylated C's in CpG context: 231457 Total methylated C's in CHG context: 14129 Total methylated C's in CHH context: 213306 Total C to T conversions in CpG context: 97876 Total C to T conversions in CHG context: 310464 Total C to T conversions in CHH context: 1418293 C methylated in CpG context: 70.3% C methylated in CHG context: 4.4% C methylated in CHH context: 13.1%