Alignment Stats
| Sequences analysed in total |
46455148 |
| Single-end alignments with a unique best hit |
2013278 |
| Sequences without alignments under any condition |
42132594 |
| Sequences that did not map uniquely |
2309276 |
| Genomic sequence context not extractable (edges of chromosomes) |
69 |
|
|
Cytosine Methylation
| Total C's analysed |
12294135 |
| Methylated C's in CpG context |
1280460 |
| Methylated C's in CHG context |
56701 |
| Methylated C's in CHH context |
642287 |
| Methylated C's in Unknown context |
42 |
| Unmethylated C's in CpG context |
536403 |
| Unmethylated C's in CHG context |
2079296 |
| Unmethylated C's in CHH context |
7698988 |
| Unmethylated C's in Unknown context |
457 |
| Percentage methylation (CpG context) |
70.5% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
7.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
403589 |
original top strand |
| CTOT |
576906 |
complementary to original top strand |
| CTOB |
596358 |
complementary to original bottom strand |
| OB |
436356 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
2013209 |
| Unique alignments |
384179 |
| Duplicates removed |
1629030 |
| Duplicated alignments were found at 170292 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2354787 |
| Methylated C's in CpG context |
198359 |
| Methylated C's in CHG context |
12844 |
| Methylated C's in CHH context |
216864 |
| Unmethylated C's in CpG context |
101931 |
| Unmethylated C's in CHG context |
320460 |
| Unmethylated C's in CHH context |
1504329 |
| Percentage methylation (CpG context) |
66.1% |
| Percentage methylation (CHG context) |
3.9% |
| Percentage methylation (CHH context) |
12.6% |
|
|
M-Bias Plot
