Alignment Stats
| Sequences analysed in total |
47401736 |
| Single-end alignments with a unique best hit |
2079533 |
| Sequences without alignments under any condition |
42966736 |
| Sequences that did not map uniquely |
2355467 |
| Genomic sequence context not extractable (edges of chromosomes) |
73 |
|
|
Cytosine Methylation
| Total C's analysed |
12804963 |
| Methylated C's in CpG context |
1404189 |
| Methylated C's in CHG context |
61962 |
| Methylated C's in CHH context |
717589 |
| Methylated C's in Unknown context |
50 |
| Unmethylated C's in CpG context |
670203 |
| Unmethylated C's in CHG context |
2249103 |
| Unmethylated C's in CHH context |
7701917 |
| Unmethylated C's in Unknown context |
461 |
| Percentage methylation (CpG context) |
67.7% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
8.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
426898 |
original top strand |
| CTOT |
580972 |
complementary to original top strand |
| CTOB |
608521 |
complementary to original bottom strand |
| OB |
463069 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
2079460 |
| Unique alignments |
388651 |
| Duplicates removed |
1690809 |
| Duplicated alignments were found at 171673 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2397810 |
| Methylated C's in CpG context |
196351 |
| Methylated C's in CHG context |
13520 |
| Methylated C's in CHH context |
238368 |
| Unmethylated C's in CpG context |
123953 |
| Unmethylated C's in CHG context |
328465 |
| Unmethylated C's in CHH context |
1497153 |
| Percentage methylation (CpG context) |
61.3% |
| Percentage methylation (CHG context) |
4.0% |
| Percentage methylation (CHH context) |
13.7% |
|
|
M-Bias Plot
