Alignment Stats
| Sequences analysed in total |
46105140 |
| Single-end alignments with a unique best hit |
2050964 |
| Sequences without alignments under any condition |
41863391 |
| Sequences that did not map uniquely |
2190785 |
| Genomic sequence context not extractable (edges of chromosomes) |
63 |
|
|
Cytosine Methylation
| Total C's analysed |
12647847 |
| Methylated C's in CpG context |
1678932 |
| Methylated C's in CHG context |
69149 |
| Methylated C's in CHH context |
679879 |
| Methylated C's in Unknown context |
82 |
| Unmethylated C's in CpG context |
579763 |
| Unmethylated C's in CHG context |
2266089 |
| Unmethylated C's in CHH context |
7374035 |
| Unmethylated C's in Unknown context |
359 |
| Percentage methylation (CpG context) |
74.3% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
8.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
413480 |
original top strand |
| CTOT |
579519 |
complementary to original top strand |
| CTOB |
612385 |
complementary to original bottom strand |
| OB |
445517 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
2050901 |
| Unique alignments |
351822 |
| Duplicates removed |
1699079 |
| Duplicated alignments were found at 162203 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2184474 |
| Methylated C's in CpG context |
213059 |
| Methylated C's in CHG context |
13257 |
| Methylated C's in CHH context |
216278 |
| Unmethylated C's in CpG context |
94747 |
| Unmethylated C's in CHG context |
300551 |
| Unmethylated C's in CHH context |
1346582 |
| Percentage methylation (CpG context) |
69.2% |
| Percentage methylation (CHG context) |
4.2% |
| Percentage methylation (CHH context) |
13.8% |
|
|
M-Bias Plot
