zr1394_2_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 351822 lines in total Total number of methylation call strings processed: 351822 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2184474 Total methylated C's in CpG context: 213059 Total methylated C's in CHG context: 13257 Total methylated C's in CHH context: 216278 Total C to T conversions in CpG context: 94747 Total C to T conversions in CHG context: 300551 Total C to T conversions in CHH context: 1346582 C methylated in CpG context: 69.2% C methylated in CHG context: 4.2% C methylated in CHH context: 13.8%