Alignment Stats
| Sequences analysed in total |
46792286 |
| Single-end alignments with a unique best hit |
2117445 |
| Sequences without alignments under any condition |
42430582 |
| Sequences that did not map uniquely |
2244259 |
| Genomic sequence context not extractable (edges of chromosomes) |
52 |
|
|
Cytosine Methylation
| Total C's analysed |
13077617 |
| Methylated C's in CpG context |
1860212 |
| Methylated C's in CHG context |
70565 |
| Methylated C's in CHH context |
647883 |
| Methylated C's in Unknown context |
68 |
| Unmethylated C's in CpG context |
609554 |
| Unmethylated C's in CHG context |
2297560 |
| Unmethylated C's in CHH context |
7591843 |
| Unmethylated C's in Unknown context |
342 |
| Percentage methylation (CpG context) |
75.3% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
7.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
432543 |
original top strand |
| CTOT |
585370 |
complementary to original top strand |
| CTOB |
625468 |
complementary to original bottom strand |
| OB |
474012 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
2117393 |
| Unique alignments |
359138 |
| Duplicates removed |
1758255 |
| Duplicated alignments were found at 165505 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2224066 |
| Methylated C's in CpG context |
219081 |
| Methylated C's in CHG context |
13541 |
| Methylated C's in CHH context |
210878 |
| Unmethylated C's in CpG context |
100089 |
| Unmethylated C's in CHG context |
301405 |
| Unmethylated C's in CHH context |
1379072 |
| Percentage methylation (CpG context) |
68.6% |
| Percentage methylation (CHG context) |
4.3% |
| Percentage methylation (CHH context) |
13.3% |
|
|
M-Bias Plot
