zr1394_18_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 384697 lines in total Total number of methylation call strings processed: 384697 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2391747 Total methylated C's in CpG context: 228558 Total methylated C's in CHG context: 13938 Total methylated C's in CHH context: 225068 Total C to T conversions in CpG context: 102063 Total C to T conversions in CHG context: 328800 Total C to T conversions in CHH context: 1493320 C methylated in CpG context: 69.1% C methylated in CHG context: 4.1% C methylated in CHH context: 13.1%