Alignment Stats
| Sequences analysed in total |
42070546 |
| Single-end alignments with a unique best hit |
1869213 |
| Sequences without alignments under any condition |
38251437 |
| Sequences that did not map uniquely |
1949896 |
| Genomic sequence context not extractable (edges of chromosomes) |
48 |
|
|
Cytosine Methylation
| Total C's analysed |
11616286 |
| Methylated C's in CpG context |
1919141 |
| Methylated C's in CHG context |
67905 |
| Methylated C's in CHH context |
604313 |
| Methylated C's in Unknown context |
124 |
| Unmethylated C's in CpG context |
498929 |
| Unmethylated C's in CHG context |
2161381 |
| Unmethylated C's in CHH context |
6364617 |
| Unmethylated C's in Unknown context |
258 |
| Percentage methylation (CpG context) |
79.4% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
8.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
390250 |
original top strand |
| CTOT |
512015 |
complementary to original top strand |
| CTOB |
550090 |
complementary to original bottom strand |
| OB |
416810 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
1869165 |
| Unique alignments |
290788 |
| Duplicates removed |
1578377 |
| Duplicated alignments were found at 133346 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
1825743 |
| Methylated C's in CpG context |
202011 |
| Methylated C's in CHG context |
12480 |
| Methylated C's in CHH context |
193496 |
| Unmethylated C's in CpG context |
70791 |
| Unmethylated C's in CHG context |
249245 |
| Unmethylated C's in CHH context |
1097720 |
| Percentage methylation (CpG context) |
74.1% |
| Percentage methylation (CHG context) |
4.8% |
| Percentage methylation (CHH context) |
15.0% |
|
|
M-Bias Plot
