zr1394_17_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 290788 lines in total Total number of methylation call strings processed: 290788 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1825743 Total methylated C's in CpG context: 202011 Total methylated C's in CHG context: 12480 Total methylated C's in CHH context: 193496 Total C to T conversions in CpG context: 70791 Total C to T conversions in CHG context: 249245 Total C to T conversions in CHH context: 1097720 C methylated in CpG context: 74.1% C methylated in CHG context: 4.8% C methylated in CHH context: 15.0%