Alignment Stats
| Sequences analysed in total |
87834637 |
| Single-end alignments with a unique best hit |
4288182 |
| Sequences without alignments under any condition |
79466280 |
| Sequences that did not map uniquely |
4080175 |
| Genomic sequence context not extractable (edges of chromosomes) |
80 |
|
|
Cytosine Methylation
| Total C's analysed |
26352415 |
| Methylated C's in CpG context |
4467852 |
| Methylated C's in CHG context |
149314 |
| Methylated C's in CHH context |
1095506 |
| Methylated C's in Unknown context |
120 |
| Unmethylated C's in CpG context |
1161113 |
| Unmethylated C's in CHG context |
4546966 |
| Unmethylated C's in CHH context |
14931664 |
| Unmethylated C's in Unknown context |
508 |
| Percentage methylation (CpG context) |
79.4% |
| Percentage methylation (CHG context) |
3.2% |
| Percentage methylation (CHH context) |
6.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
892242 |
original top strand |
| CTOT |
1163049 |
complementary to original top strand |
| CTOB |
1266779 |
complementary to original bottom strand |
| OB |
966032 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
4288102 |
| Unique alignments |
447280 |
| Duplicates removed |
3840822 |
| Duplicated alignments were found at 226432 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2753570 |
| Methylated C's in CpG context |
286266 |
| Methylated C's in CHG context |
17092 |
| Methylated C's in CHH context |
251098 |
| Unmethylated C's in CpG context |
112046 |
| Unmethylated C's in CHG context |
356809 |
| Unmethylated C's in CHH context |
1730259 |
| Percentage methylation (CpG context) |
71.9% |
| Percentage methylation (CHG context) |
4.6% |
| Percentage methylation (CHH context) |
12.7% |
|
|
M-Bias Plot
