zr1394_all_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 140425 lines in total Total number of methylation call strings processed: 140425 Final Cytosine Methylation Report ================================= Total number of C's analysed: 988380 Total methylated C's in CpG context: 50777 Total methylated C's in CHG context: 20676 Total methylated C's in CHH context: 183159 Total C to T conversions in CpG context: 73873 Total C to T conversions in CHG context: 105337 Total C to T conversions in CHH context: 554558 C methylated in CpG context: 40.7% C methylated in CHG context: 16.4% C methylated in CHH context: 24.8%