zr1394_9_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 28224 lines in total Total number of methylation call strings processed: 28224 Final Cytosine Methylation Report ================================= Total number of C's analysed: 209889 Total methylated C's in CpG context: 7438 Total methylated C's in CHG context: 3438 Total methylated C's in CHH context: 42191 Total C to T conversions in CpG context: 12857 Total C to T conversions in CHG context: 18335 Total C to T conversions in CHH context: 125630 C methylated in CpG context: 36.6% C methylated in CHG context: 15.8% C methylated in CHH context: 25.1%