zr1394_7_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 21865 lines in total Total number of methylation call strings processed: 21865 Final Cytosine Methylation Report ================================= Total number of C's analysed: 162283 Total methylated C's in CpG context: 6840 Total methylated C's in CHG context: 3096 Total methylated C's in CHH context: 34369 Total C to T conversions in CpG context: 9616 Total C to T conversions in CHG context: 14059 Total C to T conversions in CHH context: 94303 C methylated in CpG context: 41.6% C methylated in CHG context: 18.0% C methylated in CHH context: 26.7%