zr1394_6_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 19043 lines in total Total number of methylation call strings processed: 19043 Final Cytosine Methylation Report ================================= Total number of C's analysed: 145821 Total methylated C's in CpG context: 4773 Total methylated C's in CHG context: 2601 Total methylated C's in CHH context: 30565 Total C to T conversions in CpG context: 8768 Total C to T conversions in CHG context: 12179 Total C to T conversions in CHH context: 86935 C methylated in CpG context: 35.2% C methylated in CHG context: 17.6% C methylated in CHH context: 26.0%