zr1394_5_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 22195 lines in total Total number of methylation call strings processed: 22195 Final Cytosine Methylation Report ================================= Total number of C's analysed: 165255 Total methylated C's in CpG context: 5787 Total methylated C's in CHG context: 3061 Total methylated C's in CHH context: 38005 Total C to T conversions in CpG context: 9997 Total C to T conversions in CHG context: 13748 Total C to T conversions in CHH context: 94657 C methylated in CpG context: 36.7% C methylated in CHG context: 18.2% C methylated in CHH context: 28.6%