zr1394_4_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 18809 lines in total Total number of methylation call strings processed: 18809 Final Cytosine Methylation Report ================================= Total number of C's analysed: 142595 Total methylated C's in CpG context: 6220 Total methylated C's in CHG context: 2848 Total methylated C's in CHH context: 31126 Total C to T conversions in CpG context: 8211 Total C to T conversions in CHG context: 12177 Total C to T conversions in CHH context: 82013 C methylated in CpG context: 43.1% C methylated in CHG context: 19.0% C methylated in CHH context: 27.5%