Alignment Stats
| Sequences analysed in total |
46105140 |
| Single-end alignments with a unique best hit |
45684 |
| Sequences without alignments under any condition |
46014221 |
| Sequences that did not map uniquely |
45235 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
413360 |
| Methylated C's in CpG context |
9582 |
| Methylated C's in CHG context |
7044 |
| Methylated C's in CHH context |
101882 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
13142 |
| Unmethylated C's in CHG context |
26557 |
| Unmethylated C's in CHH context |
255153 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
42.2% |
| Percentage methylation (CHG context) |
21.0% |
| Percentage methylation (CHH context) |
28.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11348 |
original top strand |
| CTOT |
14951 |
complementary to original top strand |
| CTOB |
11190 |
complementary to original bottom strand |
| OB |
8195 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
45684 |
| Unique alignments |
19947 |
| Duplicates removed |
25737 |
| Duplicated alignments were found at 4090 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
149958 |
| Methylated C's in CpG context |
5979 |
| Methylated C's in CHG context |
2972 |
| Methylated C's in CHH context |
33824 |
| Unmethylated C's in CpG context |
8723 |
| Unmethylated C's in CHG context |
12369 |
| Unmethylated C's in CHH context |
86091 |
| Percentage methylation (CpG context) |
40.7% |
| Percentage methylation (CHG context) |
19.4% |
| Percentage methylation (CHH context) |
28.2% |
|
|
M-Bias Plot
