zr1394_2_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 19947 lines in total Total number of methylation call strings processed: 19947 Final Cytosine Methylation Report ================================= Total number of C's analysed: 149958 Total methylated C's in CpG context: 5979 Total methylated C's in CHG context: 2972 Total methylated C's in CHH context: 33824 Total C to T conversions in CpG context: 8723 Total C to T conversions in CHG context: 12369 Total C to T conversions in CHH context: 86091 C methylated in CpG context: 40.7% C methylated in CHG context: 19.4% C methylated in CHH context: 28.2%