zr1394_1_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 20374 lines in total Total number of methylation call strings processed: 20374 Final Cytosine Methylation Report ================================= Total number of C's analysed: 152754 Total methylated C's in CpG context: 6352 Total methylated C's in CHG context: 3158 Total methylated C's in CHH context: 33728 Total C to T conversions in CpG context: 8815 Total C to T conversions in CHG context: 12825 Total C to T conversions in CHH context: 87876 C methylated in CpG context: 41.9% C methylated in CHG context: 19.8% C methylated in CHH context: 27.7%