Alignment Stats
| Sequences analysed in total |
55048106 |
| Single-end alignments with a unique best hit |
48702 |
| Sequences without alignments under any condition |
54952474 |
| Sequences that did not map uniquely |
46930 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
442168 |
| Methylated C's in CpG context |
9975 |
| Methylated C's in CHG context |
6531 |
| Methylated C's in CHH context |
96836 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
14995 |
| Unmethylated C's in CHG context |
29693 |
| Unmethylated C's in CHH context |
284138 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
39.9% |
| Percentage methylation (CHG context) |
18.0% |
| Percentage methylation (CHH context) |
25.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11572 |
original top strand |
| CTOT |
16227 |
complementary to original top strand |
| CTOB |
12191 |
complementary to original bottom strand |
| OB |
8712 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
48702 |
| Unique alignments |
20726 |
| Duplicates removed |
27976 |
| Duplicated alignments were found at 4284 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
157094 |
| Methylated C's in CpG context |
6042 |
| Methylated C's in CHG context |
2860 |
| Methylated C's in CHH context |
33534 |
| Unmethylated C's in CpG context |
9513 |
| Unmethylated C's in CHG context |
13513 |
| Unmethylated C's in CHH context |
91632 |
| Percentage methylation (CpG context) |
38.8% |
| Percentage methylation (CHG context) |
17.5% |
| Percentage methylation (CHH context) |
26.8% |
|
|
M-Bias Plot
