zr1394_18_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 20726 lines in total Total number of methylation call strings processed: 20726 Final Cytosine Methylation Report ================================= Total number of C's analysed: 157094 Total methylated C's in CpG context: 6042 Total methylated C's in CHG context: 2860 Total methylated C's in CHH context: 33534 Total C to T conversions in CpG context: 9513 Total C to T conversions in CHG context: 13513 Total C to T conversions in CHH context: 91632 C methylated in CpG context: 38.8% C methylated in CHG context: 17.5% C methylated in CHH context: 26.8%