zr1394_17_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 20003 lines in total Total number of methylation call strings processed: 20003 Final Cytosine Methylation Report ================================= Total number of C's analysed: 147288 Total methylated C's in CpG context: 6935 Total methylated C's in CHG context: 3064 Total methylated C's in CHH context: 34116 Total C to T conversions in CpG context: 8570 Total C to T conversions in CHG context: 12727 Total C to T conversions in CHH context: 81876 C methylated in CpG context: 44.7% C methylated in CHG context: 19.4% C methylated in CHH context: 29.4%