zr1394_16_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 27663 lines in total Total number of methylation call strings processed: 27663 Final Cytosine Methylation Report ================================= Total number of C's analysed: 203654 Total methylated C's in CpG context: 10065 Total methylated C's in CHG context: 4084 Total methylated C's in CHH context: 40789 Total C to T conversions in CpG context: 12148 Total C to T conversions in CHG context: 18587 Total C to T conversions in CHH context: 117981 C methylated in CpG context: 45.3% C methylated in CHG context: 18.0% C methylated in CHH context: 25.7%