zr1394_15_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 26337 lines in total Total number of methylation call strings processed: 26337 Final Cytosine Methylation Report ================================= Total number of C's analysed: 194637 Total methylated C's in CpG context: 9811 Total methylated C's in CHG context: 4057 Total methylated C's in CHH context: 40377 Total C to T conversions in CpG context: 11554 Total C to T conversions in CHG context: 17815 Total C to T conversions in CHH context: 111023 C methylated in CpG context: 45.9% C methylated in CHG context: 18.5% C methylated in CHH context: 26.7%