Alignment Stats
| Sequences analysed in total |
87834637 |
| Single-end alignments with a unique best hit |
73054 |
| Sequences without alignments under any condition |
87680345 |
| Sequences that did not map uniquely |
81238 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
662534 |
| Methylated C's in CpG context |
17289 |
| Methylated C's in CHG context |
9397 |
| Methylated C's in CHH context |
123380 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
22945 |
| Unmethylated C's in CHG context |
47531 |
| Unmethylated C's in CHH context |
441992 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
43.0% |
| Percentage methylation (CHG context) |
16.5% |
| Percentage methylation (CHH context) |
21.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
18485 |
original top strand |
| CTOT |
23389 |
complementary to original top strand |
| CTOB |
17632 |
complementary to original bottom strand |
| OB |
13548 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
73054 |
| Unique alignments |
29797 |
| Duplicates removed |
43257 |
| Duplicated alignments were found at 5889 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
222251 |
| Methylated C's in CpG context |
10111 |
| Methylated C's in CHG context |
4142 |
| Methylated C's in CHH context |
41177 |
| Unmethylated C's in CpG context |
13872 |
| Unmethylated C's in CHG context |
20535 |
| Unmethylated C's in CHH context |
132414 |
| Percentage methylation (CpG context) |
42.2% |
| Percentage methylation (CHG context) |
16.8% |
| Percentage methylation (CHH context) |
23.7% |
|
|
M-Bias Plot
