Alignment Stats
| Sequences analysed in total |
64352550 |
| Single-end alignments with a unique best hit |
57456 |
| Sequences without alignments under any condition |
64237333 |
| Sequences that did not map uniquely |
57761 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
515655 |
| Methylated C's in CpG context |
13921 |
| Methylated C's in CHG context |
8111 |
| Methylated C's in CHH context |
110523 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
17473 |
| Unmethylated C's in CHG context |
36139 |
| Unmethylated C's in CHH context |
329488 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
44.3% |
| Percentage methylation (CHG context) |
18.3% |
| Percentage methylation (CHH context) |
25.1% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
14372 |
original top strand |
| CTOT |
18284 |
complementary to original top strand |
| CTOB |
14371 |
complementary to original bottom strand |
| OB |
10429 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
57456 |
| Unique alignments |
24256 |
| Duplicates removed |
33200 |
| Duplicated alignments were found at 4909 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
181158 |
| Methylated C's in CpG context |
8337 |
| Methylated C's in CHG context |
3609 |
| Methylated C's in CHH context |
37785 |
| Unmethylated C's in CpG context |
10886 |
| Unmethylated C's in CHG context |
16185 |
| Unmethylated C's in CHH context |
104356 |
| Percentage methylation (CpG context) |
43.4% |
| Percentage methylation (CHG context) |
18.2% |
| Percentage methylation (CHH context) |
26.6% |
|
|
M-Bias Plot
