zr1394_13_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 24256 lines in total Total number of methylation call strings processed: 24256 Final Cytosine Methylation Report ================================= Total number of C's analysed: 181158 Total methylated C's in CpG context: 8337 Total methylated C's in CHG context: 3609 Total methylated C's in CHH context: 37785 Total C to T conversions in CpG context: 10886 Total C to T conversions in CHG context: 16185 Total C to T conversions in CHH context: 104356 C methylated in CpG context: 43.4% C methylated in CHG context: 18.2% C methylated in CHH context: 26.6%