zr1394_11_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 20372 lines in total Total number of methylation call strings processed: 20372 Final Cytosine Methylation Report ================================= Total number of C's analysed: 152158 Total methylated C's in CpG context: 7622 Total methylated C's in CHG context: 3046 Total methylated C's in CHH context: 30689 Total C to T conversions in CpG context: 9109 Total C to T conversions in CHG context: 13842 Total C to T conversions in CHH context: 87850 C methylated in CpG context: 45.6% C methylated in CHG context: 18.0% C methylated in CHH context: 25.9%