File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr1394_10_s456_trimmed_bismark_bt2.bam	78221457	66725	78101182	53550	0	41346	25379	183387	8263	11396	3657	16606	39733	103732
zr1394_11_s456_trimmed_bismark_bt2.bam	54458572	45087	54368235	45250	0	24715	20372	152158	7622	9109	3046	13842	30689	87850
zr1394_12_s456_trimmed_bismark_bt2.bam	59459431	56093	59346303	57035	0	31288	24805	184349	6654	11236	3105	15761	39493	108100
zr1394_13_s456_trimmed_bismark_bt2.bam	64352550	57456	64237333	57761	0	33200	24256	181158	8337	10886	3609	16185	37785	104356
zr1394_14_s456_trimmed_bismark_bt2.bam	87834637	73054	87680345	81238	0	43257	29797	222251	10111	13872	4142	20535	41177	132414
zr1394_15_s456_trimmed_bismark_bt2.bam	67984205	60150	67866144	57911	0	33813	26337	194637	9811	11554	4057	17815	40377	111023
zr1394_16_s456_trimmed_bismark_bt2.bam	74531056	63096	74404709	63251	0	35433	27663	203654	10065	12148	4084	18587	40789	117981
zr1394_17_s456_trimmed_bismark_bt2.bam	42070546	41080	41994231	35235	0	21077	20003	147288	6935	8570	3064	12727	34116	81876
zr1394_18_s456_trimmed_bismark_bt2.bam	55048106	48702	54952474	46930	0	27976	20726	157094	6042	9513	2860	13513	33534	91632
zr1394_1_s456_trimmed_bismark_bt2.bam	46792286	44887	46701591	45808	0	24513	20374	152754	6352	8815	3158	12825	33728	87876
zr1394_2_s456_trimmed_bismark_bt2.bam	46105140	45684	46014221	45235	0	25737	19947	149958	5979	8723	2972	12369	33824	86091
zr1394_3_s456_trimmed_bismark_bt2.bam	48376729	45097	48284321	47311	0	25004	20093	152187	6120	9099	2843	13065	31545	89515
zr1394_4_s456_trimmed_bismark_bt2.bam	44905078	42602	44819761	42715	0	23793	18809	142595	6220	8211	2848	12177	31126	82013
zr1394_5_s456_trimmed_bismark_bt2.bam	47401736	49826	47302825	49085	0	27631	22195	165255	5787	9997	3061	13748	38005	94657
zr1394_6_s456_trimmed_bismark_bt2.bam	46455148	43915	46365550	45683	0	24872	19043	145821	4773	8768	2601	12179	30565	86935
zr1394_7_s456_trimmed_bismark_bt2.bam	49730113	45063	49642436	42614	0	23198	21865	162283	6840	9616	3096	14059	34369	94303
zr1394_8_s456_trimmed_bismark_bt2.bam	38697189	37281	38620922	38985	1	20599	16682	127461	5382	7089	2475	10749	27803	73963
zr1394_9_s456_trimmed_bismark_bt2.bam	77350922	71985	77197216	81721	0	43761	28224	209889	7438	12857	3438	18335	42191	125630
zr1394_all_s456_trimmed_bismark_bt2.bam	605809374	532554	604756951	519869	0	392129	140425	988380	50777	73873	20676	105337	183159	554558