File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam	9246318	4351922	137109	4754232	3055	513287	3838635	21669035	747767	1808397	92651	3389071	2215781	13415368
2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam	11654467	5430039	191064	6029570	3794	707856	4722183	26662705	901196	2236119	150502	4126765	2806928	16441195
3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam	11555321	5433154	173630	5944830	3707	746867	4686287	26424291	908872	2196441	109325	4131710	2698694	16379249
4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam	11408856	5361190	163003	5880935	3728	652293	4708897	26471633	929005	2180754	107697	4130778	2661463	16461936
5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam	12231319	5714916	184967	6327478	3958	780441	4934475	27854315	935861	2346339	124388	4353881	2873426	17220420
6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.bam	12175584	5692640	199356	6279758	3830	745106	4947534	27887572	904070	2346633	142318	4281157	3079869	17133525
7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam	10113854	4729678	144592	5236358	3226	515601	4214077	23724495	785155	1991364	93231	3690612	2435091	14729042
8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam	13949213	6483037	214634	7246910	4632	894148	5588889	31571331	981149	2739481	137864	4925444	3219474	19567919