8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: single-end (SAM format) Output specified: comprehensive Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 5588889 lines in total Total number of methylation call strings processed: 5588889 Final Cytosine Methylation Report ================================= Total number of C's analysed: 31571331 Total methylated C's in CpG context: 981149 Total methylated C's in CHG context: 137864 Total methylated C's in CHH context: 3219474 Total C to T conversions in CpG context: 2739481 Total C to T conversions in CHG context: 4925444 Total C to T conversions in CHH context: 19567919 C methylated in CpG context: 26.4% C methylated in non-CpG context: 12.1%